HsaEX6016599 @ hg38
Exon Skipping
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
Coordinates
chr2:169607104-169614493:+
Coord C1 exon
chr2:169607104-169607148
Coord A exon
chr2:169608671-169608758
Coord C2 exon
chr2:169614464-169614493
Length
88 bp
Sequences
Splice sites
3' ss Seq
AAAACTTTACTTCTCTATAGACG
3' ss Score
5.77
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GAAATGGACGAGGAGGGGAATCTATCTATGGAGGATTTTTTGAAG
Seq A exon
ACGAGAGTTTCGCTGTTAAACACAACAAAGAATTTCTCTTGTCAATGGCCAACAGAGGGAAGGATACAAATGGTTCACAGTTCTTCAT
Seq C2 exon
AACAACGAAACCAACTCCTCATTTAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-'19-25,'19-18,23-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.192 C2=0.495
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(17.3=100)
A:
PF0016016=Pro_isomerase=FE(17.5=100),PF095075=CDC27=PU(8.5=60.0)
C2:
PF0016016=Pro_isomerase=FE(6.0=100),PF095075=CDC27=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGACGAGGAGGGGAATCT
R:
CCATCTAAATGAGGAGTTGGTTTCG
Band lengths:
73-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains