HsaEX6016599 @ hg19
Exon Skipping
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:HGNC Symbol;Acc:14650]
Coordinates
chr2:170463614-170471003:+
Coord C1 exon
chr2:170463614-170463658
Coord A exon
chr2:170465181-170465268
Coord C2 exon
chr2:170470974-170471003
Length
88 bp
Sequences
Splice sites
3' ss Seq
AAAACTTTACTTCTCTATAGACG
3' ss Score
5.77
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
GAAATGGACGAGGAGGGGAATCTATCTATGGAGGATTTTTTGAAG
Seq A exon
ACGAGAGTTTCGCTGTTAAACACAACAAAGAATTTCTCTTGTCAATGGCCAACAGAGGGAAGGATACAAATGGTTCACAGTTCTTCAT
Seq C2 exon
AACAACGAAACCAACTCCTCATTTAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.226 C2=0.494
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(9.0=100),PF062177=GAGA_bind=PU(7.7=87.5)
A:
PF0016016=Pro_isomerase=FE(17.5=100),PF062177=GAGA_bind=FE(15.9=100),PF094685=RNase_H2-Ydr279=PU(16.0=83.3)
C2:
PF0016016=Pro_isomerase=FE(6.0=100),PF062177=GAGA_bind=FE(5.5=100),PF094685=RNase_H2-Ydr279=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGACGAGGAGGGGAATCT
R:
CCATCTAAATGAGGAGTTGGTTTCG
Band lengths:
73-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)