RnoEX0077189 @ rn6
Exon Skipping
Gene
ENSRNOG00000015701 | Rreb1
Description
ras responsive element binding protein 1 [Source:RGD Symbol;Acc:1310904]
Coordinates
chr17:27593510-27598021:-
Coord C1 exon
chr17:27597809-27598021
Coord A exon
chr17:27596633-27596670
Coord C2 exon
chr17:27593510-27593599
Length
38 bp
Sequences
Splice sites
3' ss Seq
GTGCCTGAGAAAATACTCAGCCT
3' ss Score
-6.55
5' ss Seq
AAGGTTTAT
5' ss Score
4.64
Exon sequences
Seq C1 exon
TTCTATAGTGGAGACTTCTTAGAAGCATAAAACCCCGTCCCGATGACGTCAAATCCGCCCACTGGTTTAGAAGGCTCAGACCTGTCTTCCGTCAACACCATGATGTCAGCAGTAATGAGTATATCGAGTGTCACTGAGAATGGTGGGAGCCCCCAGGGCATCAAGTCCCCCATGAAGCCTCCAGGACCAAATCGCATTGGCAGAAGGAACCAG
Seq A exon
CCTGAGCACAGAAGGAACACTAGCCCTGGGAAGAAAAG
Seq C2 exon
GAAACGAAAGAGGAGAAGTCTTCCTACAACTGTCCCCTATGTGAAAAGGTCTGCACTACCCAGCACCAGCTGACCATGCACATCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015701_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.643
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=PU(91.3=70.0)
Main Inclusion Isoform:
ENSRNOT00000060218fB12705
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAAGTCCCCCATGAAGCC
R:
GCTGGGTAGTGCAGACCTTTT
Band lengths:
119-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]