MmuEX6057947 @ mm10
Exon Skipping
Gene
ENSMUSG00000039087 | Rreb1
Description
ras responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:2443664]
Coordinates
chr13:37893772-37898501:+
Coord C1 exon
chr13:37893772-37893984
Coord A exon
chr13:37894895-37895198
Coord C2 exon
chr13:37898412-37898501
Length
304 bp
Sequences
Splice sites
3' ss Seq
TAATGGCTGTTCTTATGCAGACT
3' ss Score
5.52
5' ss Seq
AAGGTTTAT
5' ss Score
4.64
Exon sequences
Seq C1 exon
TTCTATAGCAGAGACTTCTTAGAAGCATAAAACCCTGTCCCGATGACGTCGAATTCGCCCATTGGTTTAGAAGGCTCAGACCTGTCTTCCATCAACACCATGATGTCAGCAGTAATGAGCGTAGCGAGTGTCACAGAGAATGGTGGGAGCCCCCAGGGCATCAAGTCCCCCATGAAACCTCCAGGACCAAATCGGATTGGCAGAAGGAACCAG
Seq A exon
ACTACTCTCTGAGAACATCTATGATGACCTTTGACAAACGCTCAGGTTTTTAGCTCAATGTGCCCTCTAGGAGGTGGAGTAACAGTTCTACGTTCCCTGCAGCATGTAAGTGTGCATGCCTCCGTTCCTCACCTCAAGCCTGAGGCCTCGACAGAGCTCAGGAATGTTTTATAGGCTTGGAGCATTGATAACTCTCTTTCTCTCTCTCTCTCTCCCCCCTGCCTTCGTGTGCCTCTCTTCCTGTGGGTGCCTGAGAAAATACTCAGCCTGAGCACAGAAGGAACACTAGCCCTGGGAAGAAAAG
Seq C2 exon
GAAACGAAAGAGGAGAAGTCTTCCTACAACTGTCCCCTATGTGAAAAGATTTGCACCACCCAGCACCAGCTGACCATGCACATCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039087_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.970 A=1.000 C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000128570fB20258
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATAGCAGAGACTTCTTAGAAGCA
R:
CTGACGGATGTGCATGGTCAG
Band lengths:
302-606
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types