GgaEX6020326 @ galGal3
Exon Skipping
Gene
ENSGALG00000012799 | RREB1
Description
NA
Coordinates
chr2:65891961-65898264:-
Coord C1 exon
chr2:65898145-65898264
Coord A exon
chr2:65896557-65896759
Coord C2 exon
chr2:65891961-65892050
Length
203 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTTCTTAATTTCAGAGA
3' ss Score
9.39
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TGCTAGAGGGTGCTACTGAAGAAGAGGCTGAAGAGCCTGATGCTACAAAACCTACTACACTAAGTGAGGAGACCAGCAAGCAAGAAGAGAGCCTCAGTCAATCAGGGGATAGCAATGAAG
Seq A exon
AGAAGCAGCTGGAAACTTTAAACAGTTACAAGGTGACACCAAGTTCACCAAACAGTTCGGACGGAGCAGACTTGTCCTCCATTGATGCCATGATGTCAGCAGTAATGAATGTGGGGAAGATAGCTGAAAATGGGGGGACCTCTCAGACTGTCAAATCTCCCTCGAAGTCTCCTGCACCAAATCGGATTGGTAGGAGGAATCAG
Seq C2 exon
GAAACAAAAGAAGAGAAGTCTTCCTATACCTGTCCTCTGTGTGAAAAGATTTGCACTACACAGCACCAGCTAACTATGCACATTCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012799-'6-7,'6-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.976 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=PU(91.3=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAGAGGGTGCTACTGAAGA
R:
ACGAATGTGCATAGTTAGCTGGT
Band lengths:
207-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]