MmuEX6057947 @ mm9
Exon Skipping
Gene
ENSMUSG00000039087 | Rreb1
Description
ras responsive element binding protein 1 [Source:MGI Symbol;Acc:MGI:2443664]
Coordinates
chr13:37984421-37990370:+
Coord C1 exon
chr13:37984421-37984527
Coord A exon
chr13:37985641-37985853
Coord C2 exon
chr13:37990281-37990370
Length
213 bp
Sequences
Splice sites
3' ss Seq
CGCTGACTTCTCTTTTTCAGTTC
3' ss Score
9.98
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CATAAAGGAGTGATATCCAGAGAATAAAAGGGCTCCCCAGAGTCATTTCCTACTCCATGTGGATGACAGCAGGAGCAAGGGACTATCATTTGGGGCAGAAAATGGAG
Seq A exon
TTCTATAGCAGAGACTTCTTAGAAGCATAAAACCCTGTCCCGATGACGTCGAATTCGCCCATTGGTTTAGAAGGCTCAGACCTGTCTTCCATCAACACCATGATGTCAGCAGTAATGAGCGTAGCGAGTGTCACAGAGAATGGTGGGAGCCCCCAGGGCATCAAGTCCCCCATGAAACCTCCAGGACCAAATCGGATTGGCAGAAGGAACCAG
Seq C2 exon
GAAACGAAAGAGGAGAAGTCTTCCTACAACTGTCCCCTATGTGAAAAGATTTGCACCACCCAGCACCAGCTGACCATGCACATCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039087-'12-12,'12-11,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.965 C2=0.488
Domain overlap (PFAM):
C1:
NA
A:
PF047109=Pellino=PU(8.9=15.8)
C2:
PF047109=Pellino=FE(28.7=100),PF138941=zf-C2H2_4=PU(87.5=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATATCCAGAGAATAAAAGGGCT
R:
CTGACGGATGTGCATGGTCAG
Band lengths:
189-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: