BtaEX6099264 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005980 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:10449]
Coordinates
chr23:47950517-47955742:-
Coord C1 exon
chr23:47955620-47955742
Coord A exon
chr23:47954816-47955028
Coord C2 exon
chr23:47950517-47950606
Length
213 bp
Sequences
Splice sites
3' ss Seq
CAGCAGTTTCTCACTTTCAGTTC
3' ss Score
6.56
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TGTCGACGAGAGATACGAAGAGAAGAGAAAAAGGAGCCCCCCAGCCTCGCTGCCTCGTCCGTGCGCCCAACCCCCGCAGCAGATGACGCGCTCATAGTGCATCAGCTGGGGCGGAGAATGGAG
Seq A exon
TTCTGTGGCCGAGGCTTTCTAGAAGCTTAAATCCTTGTCCCAATGACGTCAAGCTCGCCCATTGGCCTGGAGGGTTCAGACTTGTCTTCCATCAACACCATGATGTCAGCAGTCATGAGTGTGGGGAAGGTCACCGAGAATGGCGGGAGCCCCCAGAGCGTCAAGTCCCCCACGAAGCCTCCGGGACCAAATCGGATCGGCCGAAGGAACCAG
Seq C2 exon
GAGACGAAAGAGGAGAAGTCTTCCTACAACTGCCCCCTGTGCGAGAAGGTCTGCACCACCCAGCACCAGCTAACCATGCACATTCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005980-'1-5,'1-2,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0009621=zf-C2H2=PU(91.3=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGACGAGAGATACGAAGAGA
R:
TGGCGAATGTGCATGGTTAGC
Band lengths:
212-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]