DreEX0063460 @ danRer10
Exon Skipping
Gene
ENSDARG00000042652 | rreb1b
Description
ras responsive element binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-070912-273]
Coordinates
chr2:21386290-21390676:+
Coord C1 exon
chr2:21386290-21386421
Coord A exon
chr2:21387108-21387313
Coord C2 exon
chr2:21390587-21390676
Length
206 bp
Sequences
Splice sites
3' ss Seq
AGTAATCATGTCATTCCCAGAAG
3' ss Score
3.81
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
AAATGGAAAGTGCCTCCCCTGAAAAGACTATCAGCAATGGTGTTGGAGCTGCTGATGGGAATGAACAGTCTCATTTGTCAGAAGAGGCTGTGAACAGTCAGTCGTCCACTTGTACACCAGAACCTGTTGAAG
Seq A exon
AAGCAGACTTTGATGAAACAGACAAAGCAGCAGATGAAGATGAAGTTGGCGTAAGAACAGAGGAGGAACTGACCTCCATCAACTCCATGATGAGCACTGTGATGAATGTGGGCCAGATCAATGGAGTCGATTCTGAGACCCCCAAAACATCTCCCAGAAACACCAACAAATCACCCTCTGCTGGACGCACTGGGAGACGGAATCAG
Seq C2 exon
GAAGTCAAAGATGAACGTTCCAGCTTCATTTGCCCCCTGTGTGACAAAAACTGCATGACGCAGCACCAGCTCACCATGCACATCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042652_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF138941=zf-C2H2_4=PU(87.5=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGAAAGTGCCTCCCCTGA
R:
TGTCTGATGTGCATGGTGAGC
Band lengths:
220-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]