RnoEX6053455 @ rn6
Exon Skipping
Gene
ENSRNOG00000015701 | Rreb1
Description
ras responsive element binding protein 1 [Source:RGD Symbol;Acc:1310904]
Coordinates
chr17:27593510-27599228:-
Coord C1 exon
chr17:27599122-27599228
Coord A exon
chr17:27597809-27598021
Coord C2 exon
chr17:27593510-27593599
Length
213 bp
Sequences
Splice sites
3' ss Seq
CTGTGATTTCTGTTTTTCAGTTC
3' ss Score
9.88
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGTAAAGGAGTGGTACCGAGGGAAGCACAGGGCTCAGTAGAGCCATTTCCTACCCCATGTGGATGACAGCCGCAGCAAGGGACTATCACTTGGGGCAGAAAATGGAG
Seq A exon
TTCTATAGTGGAGACTTCTTAGAAGCATAAAACCCCGTCCCGATGACGTCAAATCCGCCCACTGGTTTAGAAGGCTCAGACCTGTCTTCCGTCAACACCATGATGTCAGCAGTAATGAGTATATCGAGTGTCACTGAGAATGGTGGGAGCCCCCAGGGCATCAAGTCCCCCATGAAGCCTCCAGGACCAAATCGCATTGGCAGAAGGAACCAG
Seq C2 exon
GAAACGAAAGAGGAGAAGTCTTCCTACAACTGTCCCCTATGTGAAAAGGTCTGCACTACCCAGCACCAGCTGACCATGCACATCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015701-'14-14,'14-10,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.643
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0009621=zf-C2H2=PU(91.3=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAAGGAGTGGTACCGAGGGA
R:
CTGACGGATGTGCATGGTCAG
Band lengths:
196-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]