GgaEX6020326 @ galGal4
Exon Skipping
Gene
ENSGALG00000012799 | RREB1
Description
ras-responsive element-binding protein 1 [Source:RefSeq peptide;Acc:NP_990380]
Coordinates
chr2:64792837-64799139:-
Coord C1 exon
chr2:64799020-64799139
Coord A exon
chr2:64797432-64797634
Coord C2 exon
chr2:64792837-64792926
Length
203 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTTCTTAATTTCAGAGA
3' ss Score
9.39
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TGCTAGAGGGTGCTACTGAAGAAGAGGCTGAAGAGCCTGATGCTACAAAACCTACTACACTAAGTGAGGAGACCAGCAAGCAAGAAGAGAGCCTCAGTCAATCAGGGGATAGCAATGAAG
Seq A exon
AGAAGCAGCTGGAAACTTTAAACAGTTACAAGGTGACACCAAGTTCACCAAACAGTTCGGACGGAGCAGACTTGTCCTCCATTGATGCCATGATGTCAGCAGTAATGAATGTGGGGAAGATAGCTGAAAATGGGGGGACCTCTCAGACTGTCAAATCTCCCTCGAAGTCTCCTGCACCAAATCGGATTGGTAGGAGGAATCAG
Seq C2 exon
GAAACAAAAGAAGAGAAGTCTTCCTATACCTGTCCTCTGTGTGAAAAGATTTGCACTACACAGCACCAGCTAACTATGCACATTCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012799-'12-7,'12-4,14-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.939 C2=0.256
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0009621=zf-C2H2=PU(91.3=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTAGAGGGTGCTACTGAAGA
R:
ACGAATGTGCATAGTTAGCTGGT
Band lengths:
207-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]