RnoEX0078553 @ rn6
Exon Skipping
Gene
ENSRNOG00000005018 | Scn2a
Description
sodium voltage-gated channel alpha subunit 2 [Source:RGD Symbol;Acc:3632]
Coordinates
chr3:51776208-51780941:+
Coord C1 exon
chr3:51776208-51776337
Coord A exon
chr3:51777849-51778039
Coord C2 exon
chr3:51780703-51780941
Length
191 bp
Sequences
Splice sites
3' ss Seq
CCCCAACCTTGCCTGCTTAGCTC
3' ss Score
5.19
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GGCACAACTACTGAGACAGAAATAAGGAAGAGGAGATCCAGTTCTTACCACGTCTCTATGGACTTGTTGGAAGACCCTTCAAGGCAAAGGGCAATGAGTATGGCCAGTATTTTGACGAACACTATGGAAG
Seq A exon
CTCACACTCCTTCTCTCCCCCAGCTGCCAGTAGCTTGCTCCTCCCTATCCCTCCAGGTAAATCTTTTGAAGAGTCTCTGGTCTTCGGCTCCTTGCCATAGCAAAACCACTGAGAGGAAGGGGCCAGTGGTTCTGCTTCCGATGTCAGCAGCATGGCTGCTCCCCAAAGCAGGAAGTAGAGGAGGAGTCAGG
Seq C2 exon
AACTTGAAGAATCCAGACAGAAATGCCCACCCTGCTGGTATAAATTTGCTAATATGTGCCTGATTTGGGACTGTTGTAAGCCATGGCTAAAGGTAAAACACGTTGTCAATCTGGTAGTGATGGATCCATTTGTTGACCTGGCCATCACCATCTGCATTGTGTTAAATACGCTCTTCATGGCCATGGAGCACTACCCCATGACTGAGCAGTTCAGCAGTGTGCTGTCTGTTGGGAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005018_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=0.203 C2=0.027
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PD(16.1=81.8)
A:
NO
C2:
PF0052026=Ion_trans=PU(1.6=3.8)
Main Inclusion Isoform:
ENSRNOT00000007069fB12981
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGAAGACCCTTCAAGGCA
R:
GTGCTCCATGGCCATGAAGAG
Band lengths:
256-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]