RnoEX0079266 @ rn6
Exon Skipping
Gene
ENSRNOG00000016512 | Sema3b
Description
semaphorin 3B [Source:RGD Symbol;Acc:1310079]
Coordinates
chr8:116354073-116355331:-
Coord C1 exon
chr8:116355276-116355331
Coord A exon
chr8:116355048-116355187
Coord C2 exon
chr8:116354073-116354615
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTTTACATTTTTGTCTCAAGACC
3' ss Score
6.2
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GCGGTTCCGGAGGCAAGACATAAGGAATGGCAACCCCAGCACCCTGTGCTCTGGGG
Seq A exon
ACCCCTCTCACTCTGTGCTGCTGGAGAGGAAGGTCTTAGGTGTGGAGAGGGGCAGCGCGTTTCTGGAGTGTGAGCCCCGCTCGCTCCAGGCGCATGTGGAATGGACCTTCCATCGTGCAGGGGAGGCAGCTCACACCCAG
Seq C2 exon
GTGCTGGCTGAGGAGCGGGTAGAGCGCACTGCACGGGGGCTGCTGTTGCGGGGGCTGCGGCGCCAGGACTCTGGCGTGTATCTGTGCGTCGCGGTTGAACAAGGCTTTTCACAACCACTGCGTCGCCTGGTGCTGCACGTGCTGAGTGCGGCACAGGCTGAACGACTGGCGAGGGCAGAGGAGGCAGCAGTTCCCGCACCACCAGGTCCTAAACTCTGGTACCGGGACTTCCTGCAGCTGGTGGAGCCAGGCGGTGGTGGAGGTGCAAACTCCCTGCGAATGTGCCGCCCGCAGCCCGGGCCCCACTCTGTGGCAGCAGATTCACGTCGTAAGGGTCGCAACAGGCGGATGCATGTCTCTGAGCTGCGTGCTGAACGTGGACCACGTAGCGCAGCTCACTGGTGACTCGGCTGTCCCCATACTGGGGACCAGGCTGGATATGACACACCGAAGAGGGGGCAGATAGATGCCAGGAAGACAGATGAGTTGTGGCTGGGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016512-'26-25,'26-23,27-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.000 C2=0.410
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(31.1=100)
A:
PF0143720=PSI=PD(9.8=12.8),PF0768612=V-set=PU(47.8=93.6)
C2:
PF0768612=V-set=PD(50.0=34.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGGCAAGACATAAGGAA
R:
GAACTGCTGCCTCCTCTGC
Band lengths:
243-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]