GgaEX6009854 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr12:2487007-2487566:+
Coord C1 exon
chr12:2487007-2487071
Coord A exon
chr12:2487174-2487304
Coord C2 exon
chr12:2487372-2487566
Length
131 bp
Sequences
Splice sites
3' ss Seq
CCCGTCCCGTTCCCATGCAGGGA
3' ss Score
10.61
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCGTGCCCGGTGCCAGGACGTGCTGAAGGCTGATGTGCTCAGCCAGTGCCAGGACACAGCAGAGG
Seq A exon
GGATGGCGGCTGTGGAGCAGCCGGTGTTCGGTGTGGAGAAGAACTCCACGTTCCTGGAGTGCCGGGCGCGCTCCCCGCAGACAGCAGTGCGGTGGCTGGCACGGCGCGGAGAGGGGCCGGGGCTGAGCGAG
Seq C2 exon
GTGAGGAGCGGCGGGCGCGTGGCGGTGCTGGAGCAGGGGCTGCTGATCCGCCAGCTGGGCCGGGAGGACGCCGGCACCTACGAGTGCCAGGCTGTGGAGCACTCCTTCTCCCGGCCCCTCACCCGCTACAGCCTGCACGTCATCCGGCACGAGGCCGCGGAGCCGCCGCATCGCCGGGGTAAAGGGGCTGAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.308
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(36.7=100)
A:
PF0143720=PSI=PD(3.3=4.5),PF0767911=I-set=PU(46.1=93.2)
C2:
PF0767911=I-set=PD(51.7=70.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGCTGAAGGCTGATGTG
R:
CTCTCAGCCCCTTTACCCCG
Band lengths:
243-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]