DreEX0070724 @ danRer10
Exon Skipping
Gene
ENSDARG00000040920 | si:dkey-49n23.1
Description
si:dkey-49n23.1 [Source:ZFIN;Acc:ZDB-GENE-050208-762]
Coordinates
chr22:30862501-30868894:-
Coord C1 exon
chr22:30868830-30868894
Coord A exon
chr22:30868473-30868606
Coord C2 exon
chr22:30862501-30863876
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTGTTCATTGCTGTCTGTAGGCT
3' ss Score
8.13
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GCGCGCCCGGAGACAGGATGTGAGGTATGGAGACCCTTGGAGCCAATGTCAGGACATGAGAGACG
Seq A exon
GCTCAGAGAATGCTGAACTGAAGACGGTTTACGGCGTGGAGACAAACTCAACTTTCCTGGAATGTGTCTCAAATTCACCACAAGCCACTATCAAGTGGATATTTCAGCCAAATCACAGTCAAAACAGCAAAGAG
Seq C2 exon
TTAGTTCCTGGTGAAGAAAACCTTCTCCACATGCAGCGTGGGCTGCTCCTCCAGCAGATAACTTCTACTAATGCTGGCCTGTACCTCTGCATGGCCTTCGAGCACTCCTTCTCCCGTACGCTAGCTCGCTATGAGCTTCACGTCATCCCCCAGAACCAAATGTCAAGAGCCCAGAACAACCTTCCCGGAAATCACGCAACCTCATTGCGGAGCTACAAGGAACTACACTTAATGGGAGTTGGTGGGCTAACGGCAGACGAGTACTGCGAGCACCTTTGGTATCGTGAGAAACGGCGACAGCACAAGCATCGCACGCTAAAGTGGAAACAGGTGTCTGAAAACCGTAAAGCCAGAGTGCGGCGGCAGAATCCACCCGACGAGCCTCTAGATGGAGGTGAAACTGCGGACTTTTAATGACAAATGTGTGACTTTTATCTGGACAAATTAGCACATTGCAGCGAAATGGCTACCAGCTACTGCTAGCACAACAACGCAACCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040920-'18-23,'18-21,19-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.050 C2=0.387
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(36.1=100)
A:
PF0143720=PSI=PD(4.9=6.7),PF138951=Ig_2=PU(45.6=91.1)
C2:
PF138951=Ig_2=PD(52.2=34.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGAGCCAATGTCAGGAC
R:
CCTTGTAGCTCCGCAATGAGG
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]