BtaEX6026786 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014920 | SEMA3E
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:HGNC Symbol;Acc:HGNC:10727]
Coordinates
chr4:37391373-37417444:+
Coord C1 exon
chr4:37391373-37391440
Coord A exon
chr4:37392977-37393116
Coord C2 exon
chr4:37416992-37417444
Length
140 bp
Sequences
Splice sites
3' ss Seq
CGTTAACATTTATGTTACAGGGG
3' ss Score
6.8
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCGATTCCGCAGACAAGATGTTCGGCATGGGAATGCAGCTCAGCAGTGCTTTGGACAGCAGTTTGTCG
Seq A exon
GGGATGCTTTGGATAAAACTGAAGAGAGATTGGCCTATGGCATAGAGAATAACAGTACTTTGCTGGAATGTACCCCACGATCTTTACAAGCAAAAGTTATCTGGTTTGTACAGAAAGGACGTGATGCAAGAAAAGAGGAG
Seq C2 exon
GTGAAGACAGATGATAGAGTGGTTAAGATGGACCTCGGTTTACTCTTCCTAAGAGTACGCAGAATGGATGCTGGGACCTATTTTTGCCAGACAGTAGAGCATAGTTTTGTTCATACAATCCGTAAAATCACCCTGGAAGTAGTGGAAGAGGAGAGAGTGGAGGAGATGTTTAACAAAGACTTTGAAGAGGATAGGCTTCATAAGATGCCTTGTCCTGCTCAGAGCATCATCCCACGTGGGACAAAACCATGGTACAAGGAATTCTTGCAGCTGATTGGTTATAGCAACTTCCAGAGAGTGGAAGAATACTGTGAAAAGGTATGGTGCACAGATAAGAAGAGAAAAAAGCTTAAAATGTCCCCTTCCAAGTGGAAGTATGCCAACCCACAGGAAAAGAAGCTCCGTCCCAAAACTGAGCACTATCGCCTGCCAAGGCACGCGCTGGACTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014920-'14-16,'14-14,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.000 C2=0.087
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(31.6=75.0)
A:
PF0004720=ig=PU(48.4=63.8)
C2:
PF0004720=ig=PD(48.4=19.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGACAGCAGTTTGTCG
R:
TCTGAGCAGGACAAGGCATCT
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]