GgaEX6000381 @ galGal4
Exon Skipping
Gene
ENSGALG00000008509 | SEMA3E
Description
semaphorin-3E precursor [Source:RefSeq peptide;Acc:NP_989573]
Coordinates
chr1:9453306-9459193:+
Coord C1 exon
chr1:9453306-9453373
Coord A exon
chr1:9453864-9454003
Coord C2 exon
chr1:9456200-9459193
Length
140 bp
Sequences
Splice sites
3' ss Seq
TAAAAAACTTTTCTTTCCAGGAG
3' ss Score
8.74
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
ACGCTTCCGCAGACAAGATGTACGACATGGAAATGCAGCTCAGCAGTGCTTTGGCCAGCAGTTCATTG
Seq A exon
GAGAAGTCCTGGAGAAGACTGAGGAGCGATTGGTTTATGGAATAGAGTACAATAGCACCCTTCTGGAGTGCACCCCTCGGACCTTACAGGCAAAAGTAATCTGGTTTGTCCAGCGAGCCCATGAAACTAAGAAGGAAGAG
Seq C2 exon
GTGAAGACAGATGAAAGAATAATCAAAATGGACCTCGGCCTCTTATTTCTGAAGCTGCATCGGCTGGATGCAGGGACTTATTTTTGTCAGACAGTGGAACACAGCATAGTTCACACTGTTAGAAAAATCACCCTGGAAATAGTTGAGGAAGAACGTGTAGATGAAATGTTCAGTAAAGACTATGAGGAGGAGATATCTCACAAAATGCCATGCCCAATGCAGAGCAACATACCTCAGGTATCAAAACCATGGTACAAAGAATTTCTTCAACTGATAGGTTACAGCAACTTCCAGAGAGTGGAGGAGTACTGTGAAAAAGTCTGGTGTACAGATAAGAAGAGAAAAAAGCTGAAAATGTCTCCATCCAAGTGGAAATATGCCAATCCTCAGGAGAAGAAGGCAAGGATCAGGCCAGAGCACTACCGGTTGCCGAGGAACATAGCTGACTCTTGATGGACAAAATCCATCTGCTGTTTCTGGGCAAAATTTTACTTGGACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008509-'18-22,'18-19,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(32.8=79.2)
A:
PF0768612=V-set=PU(47.3=91.5)
C2:
PF0768612=V-set=PD(50.5=30.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTGGCCAGCAGTTCATT
R:
GCATTGGGCATGGCATTTTGT
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]