DreEX0065048 @ danRer10
Exon Skipping
Gene
ENSDARG00000036571 | sema3e
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:ZFIN;Acc:ZDB-GENE-030131-7864]
Coordinates
chr18:9599689-9607588:+
Coord C1 exon
chr18:9599689-9599756
Coord A exon
chr18:9602299-9602426
Coord C2 exon
chr18:9606439-9607588
Length
128 bp
Sequences
Splice sites
3' ss Seq
TGTGGGTGTTTGCCTTCCAGAAG
3' ss Score
8.94
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GCGCTTCAGACGGCAAGACGTTCGTCATGGCAATGCGGTTCAGCAGTGCAACGGGCTTCAGCTTAGCG
Seq A exon
AAGAACAAAGCATCTCAGAGAAGCTGGTTTACGGTGTGGAGAACAATAGTACTTTACTGGAGTGCAGACCACGATCACTGCAGGCATCTGTAACCTGGTACATTGAACATGGCCTCGACATGGAGGAG
Seq C2 exon
GTGAAAAGTGATGATCGCATGATTCAGACGCCGCACGGCCTCTTACTCCTCCGAATAATGAAGTCAGATGCAGGAGTTTATGTGTGTCAGTCCACCGAGCATGGTTTCATCCAGACGCTGCTGAGAGTCACGTTAGAGGTGCTGGAGGAGGGAAAGGTGGAGGCTCTGCTGCATAAACCCGAGGAGGAGGATAGTGATCTTCCACACAGAGCAGCTCCACCATGCTCCTTTCCCAGCTTGCCTTCTACTTCATCAAAGCTCTGGTATAAAGACTTCATGCAGCTCATCGGATACAGCAACTTCCAGCGGGTGGAGCAGTACTGTGAAAAGGTGTGGTGCGTGGCGGACAGGAAGAGGAAGAAACTCAAGGGAATGACACCAAAATGGCGGTTAACAGCCGGGGGAGAGCAGCGGGCGAGAGCACGGGCACCTCGACACACACCGGGACAGTAGAGAACTAATTATTTTAGTCTATGCTCCATGCCGATGAGCTGATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036571_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.313
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(34.8=100),PF0768612=V-set=PU(1.1=4.2)
A:
PF0143720=PSI=PD(6.1=9.3),PF0768612=V-set=FE(46.2=100)
C2:
PF0768612=V-set=PD(50.5=30.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGTTCGTCATGGCAATGC
R:
TCACTATCCTCCTCCTCGGGT
Band lengths:
250-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]