MmuEX6015918 @ mm9

Exon Skipping

Gene

Description

sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E [Source:MGI Symbol;Acc:MGI:1340034]

Coordinates

chr5:14240570-14254314:+

Coord C1 exon

chr5:14240570-14240637

Coord A exon

chr5:14240963-14241102

Coord C2 exon

chr5:14252338-14254314

Length

140 bp

Sequences

Splice sites

3' ss Seq

CTGTTACCTTTCTGTTGTAGGAG

3' ss Score

10.84

5' ss Seq

GAGGTAACT

5' ss Score

8.77

Exon sequences

Seq C1 exon

GAGGTTCCGCAGGCAGGACGTTCGGCATGGCAACGCCGCCCAACAGTGCTTTGGACAGCAATTTGTTG

Seq A exon

GAGACGCGTTGGACAGGACTGAAGAGAGGCTGGCTTATGGCATAGAGAGCAACAGTACTCTGTTGGAATGCACCCCGCGATCACTACAAGCAAAAGTCATCTGGTTTGTACAGAAGGGACGCGACGTAAGAAAAGAAGAG

Seq C2 exon

GTGAAGACGGATGACAGAGTTGTCAAGATGGACTTGGGCTTGCTCTTCCTCAGAGTACGCAAGTCAGATGCAGGGACCTATTTTTGCCAGACAGTAGAACACAATTTTGTCCATACTGTGCGTAAAATCACCTTGGAGGTGGTCGAAGAGCATAAAGTGGAGGGCATGTTTCATAAGGACCATGAAGAGGAAAGACATCACAAGATGCCCTGCCCTCCCTTAAGCGGTATGTCTCAGGGGACAAAACCGTGGTACAAGGAATTCTTGCAGCTGATTGGCTACAGCAACTTCCAGAGAGTGGAAGAATACTGCGAAAAGGTGTGGTGTACAGATAAGAAGAGGAAAAAGCTTAAAATGTCTCCCTCCAAGTGGAAGTATGCCAACCCCCAGGAAAAGAGGCTTCGCTCTAAAGCTGAGCACTTCCGCCTGCCCAGGCACACGCTGCTCTCCTGAGGGCGCCCTCTGCCGGCGGCTGAGGAACCTAGGATGGAAACATTTTT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000063531-'15-18,'15-17,16-18=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (No Ref, Alt. Stop)

No structure available

Features