RnoEX6012457 @ rn6
Exon Skipping
Gene
ENSRNOG00000006631 | Sema3e
Description
semaphorin 3E [Source:RGD Symbol;Acc:1310973]
Coordinates
chr4:17318702-17334394:-
Coord C1 exon
chr4:17334327-17334394
Coord A exon
chr4:17333032-17333171
Coord C2 exon
chr4:17318702-17318927
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATTTTACCTTTCTGTTGTAGGAG
3' ss Score
10.36
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
GAGATTCCGCAGGCAGGATGTTCGGCACGGCAACGCCGCCCAGCAGTGCTTTGGGCAGCAATTTGTGG
Seq A exon
GAGACGCTTTGGATAGGACTGAAGAGAGGCTGGCTTATGGCATAGAGAGCAACAGTACTTTGCTGGAATGCACCCCACGATCACTACAAGCAAAAGTTGTCTGGTTTGTACAGAAGGGACGCGACGTAAGAAAGGAAGAG
Seq C2 exon
GTAAAGACGGATGACAGAGTTGTTAAGATGGACTTGGGCTTGCTCTTCCTCAGAGTCCGCAAGTCGGATGCAGGGACCTACTTTTGCCAAACGGTAGAACATAGCTTCGTCCACACTGTGCGCAAAATCACCTTGGAGGTGGTCGAAGAGCATAAAGTGGAGGGGATGTTTCATAAGGACCGCGAAGAGGAAAAACATCACAAGATGCCCTGCCCTCCCTTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006631-'18-26,'18-19,19-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.011 C2=0.249
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(30.4=70.8)
A:
PF0004720=ig=PU(48.4=63.8)
C2:
PF0004720=ig=PD(48.4=39.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGGCAGCAATTTGTGG
R:
TTAAGGGAGGGCAGGGCATC
Band lengths:
244-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]