RnoEX6037503 @ rn6
Exon Skipping
Gene
ENSRNOG00000017704 | Sema3f
Description
semaphorin 3F [Source:RGD Symbol;Acc:1308514]
Coordinates
chr8:116437696-116442687:-
Coord C1 exon
chr8:116442620-116442687
Coord A exon
chr8:116442199-116442332
Coord C2 exon
chr8:116437696-116441331
Length
134 bp
Sequences
Splice sites
3' ss Seq
AGGGTCCTCTTGATCCACAGCAA
3' ss Score
5.9
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCGGAGTCGCCGACAAGATGTCCGCCACGGGAACCCCATCAGGCAGTGCCGTGGTTTCAATTCCAATG
Seq A exon
CAAACAAGAATGCCATAGAGTCTGTGCAGTACGGCGTGGCCGGAAGTGCGGCTTTCCTTGAGTGCCAGCCTCGGTCACCTCAAGCCACTGTTAAGTGGCTTTTCCAGCGAGATCCCAGTGATCGGCGTCGTGAG
Seq C2 exon
ATTCGCGCAGAGGACCGCTTCCTGCGCACAGAGCAGGGGCTGTTGCTTCGCGCCCTGCAGCTTGGTGACCGCGGCCTCTACTCCTGCACGGCCACTGAGAACAACTTCAAGCACGTCGTCACGCGGGTACAGCTGCATGTACTGGGCCGGGACGCCGTCCATGCTGCCCTCTTCCCCCCACTGGCTGTGAGCGTCCCTCCACCTCCTGGCACAGGCCCTCCAACACCTCCTTACCAGGAGCTGGCCCAGCTCCTAGCCCAACCGGAAGTGGGCCTCATCCATCAGTACTGCCAGGGTTACTGGCGCCATGTGCCCCCCAACCCCAGGGAGGCTCCAGGAGCTCTCAGGCCTCCTGAACTCCAGGACCAGAAAAAGCCGAGGAACCGCCGCCACCATCCTCCGGACACATGAGGCCAGCTGCTGGAGGCCTACATAGGACCAGCCTAGCCCCTCATCCCTTTTAATATAAAAGATATATATATATATAAATATAAAATATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017704-'28-30,'28-27,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.089 C2=0.456
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(32.1=70.8)
A:
PF0767911=I-set=PU(45.5=88.9)
C2:
PF0767911=I-set=PD(52.3=33.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCCGTGGTTTCAATTCCA
R:
TAAGGAGGTGTTGGAGGGCC
Band lengths:
257-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]