GgaEX1056948 @ galGal4
Exon Skipping
Gene
ENSGALG00000013370 | Sema3F
Description
semaphorin-3F precursor [Source:RefSeq peptide;Acc:NP_989589]
Coordinates
chr12:3185697-3189340:+
Coord C1 exon
chr12:3185697-3185764
Coord A exon
chr12:3186617-3186750
Coord C2 exon
chr12:3186821-3189340
Length
134 bp
Sequences
Splice sites
3' ss Seq
GCCGCGTCCTGCTCCTGCAGCCA
3' ss Score
8.62
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GCGGAGCAGGCGGCAGGACGTCCGGCACGGCAACCCCATGCGCCAGTGCCGAGGCTACAACTCCAATG
Seq A exon
CCAACAAGAACACGGTGGAGGCCGTGCAGTACGGGGTGGAGGGCAGCACCGCCTTCCTCGAGTGCCAGCCCCGCTCTCCACAAGCCACCGTCAAATGGCTGCTGCAGAAGGACAACAGCGACCGACGGAAAGAG
Seq C2 exon
CTGCGCACAGAGGGCGGCCGGGCACTGCGGACAGAGCAGGGCTTGCTGCTGCGTGCCCTGCAGCTCTCCGACAGCGGGCTCTACTCCTGCACCGCCACCGAGAACAACTTCAAGCACACGGTGACCAAGGTGCAGCTGCGAGTCCTGGCCGCCCGCGCCGTGCACGCCGTCTGCTGCAAGGCGAGCTGCCCCCCGCCGCGCTGCCAGGAGCCCCAACGCCGCGCTACCAGGACCTGCTGCAGCTGCTCACCCGCCCCGAGCTGGGACTCCTCGACCAGTACTGCCAGGGCTTCTGGCGACCGCCGGCCCCCGGCCCCCCCGAACCGCTGGCTGCCCTCAAAGCCAAGGAGCTGCAGGACCAGAAGAAGCCAAGGAGCCGCCGGAATCACCCGCCAGAGAGCTGCGGGCACACATGAACCCCCTCCCCAGGGACTTTGCTAGCACAATGGTCTATTTTTCCCTCCTTTTAATATTAAAAAAGAAAAAAAATATCTATAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370-'27-36,'27-35,28-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.170 C2=0.370
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(36.8=87.5),PF0768612=V-set=PU(0.1=0.0)
A:
PF0768612=V-set=PU(47.3=97.8)
C2:
PF0768612=V-set=PD(50.5=82.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGGCTACAACTCCAATG
R:
CAGGTCCTGGTAGCGCGG
Band lengths:
257-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]