BtaEX6095227 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018307 | SEMA3F
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:HGNC Symbol;Acc:HGNC:10728]
Coordinates
chr22:50733157-50734705:-
Coord C1 exon
chr22:50734638-50734705
Coord A exon
chr22:50734244-50734377
Coord C2 exon
chr22:50733157-50733588
Length
134 bp
Sequences
Splice sites
3' ss Seq
GGCACCCTCTTGCTCTGCAGCCA
3' ss Score
7.47
5' ss Seq
GAGGTGACT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GCGGAGCCGCCGGCAGGATGTCCGGCACGGGAACCCCATCCGGCAGTGCCGTGGGTTCAATTCCAATG
Seq A exon
CCAATAAGAACGCCGTGGAGTCTGTGCAGTACGGTGTGGCAGGGAGCACAGCCTTCCTTGAGTGCCAGCCCCGCTCGCCCCAGGCTACCGTGAAGTGGCTGTTCCAGCGAGATCCCAGTGACCGGCGCCGCGAG
Seq C2 exon
GTCCACGCGGACGACCGCTTCCTGCGCACTGAACAAGGCTTGCTGCTCCGCGCCCTGCAGTCTGGTGATAGCGGCCTCTACTCCTGTACAGCCACCGAGAACAACTTCAAGCACATCATCACACGGGTGCAGCTGCATGTCCTGGGCCAGGAAGACATCCGTACGGCCCTCTTCCCACCGCCAGCTGCAAGCATTCCACCGCCAGCTGCGAGCATTCCACCGCCCCCGGGCACCGGCCCCCCAAAGCCCCGTTACCAAGAGCTGGCCCAGCTGCTGGCCCAGCCAGAAGTGGGCCTCATCCACCAGTACTGCCAGGGCTACTGGCGCCACGTGCCCCCCAGTCCCAGGGAGGCCCCAGGGGCACCCAGGCCTCCTAAACCCCAGGACCAGAAAAAACCCCGGAACCGCCGCCACCACCCACCGGACACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018307-'20-24,'20-23,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.200 C2=0.559
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(32.1=70.8)
A:
PF0768612=V-set=PU(46.7=93.3)
C2:
PF0768612=V-set=PD(51.1=31.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGTGGGTTCAATTCCAAT
R:
GTGGAATGCTCGCAGCTGG
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]