GgaEX6009980 @ galGal3
Exon Skipping
Gene
ENSGALG00000004476 | SEMA3G
Description
NA
Coordinates
chr12:2946389-2947467:-
Coord C1 exon
chr12:2947254-2947467
Coord A exon
chr12:2946923-2947062
Coord C2 exon
chr12:2946389-2946835
Length
140 bp
Sequences
Splice sites
3' ss Seq
CACTTCTGTCTCCGCCCCAGTGG
3' ss Score
6.71
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
CAAAAGCTTTATGTGGGCGCCAGCCTGGGGGTGGCCCAGGTGCGGCTGCACCAGTGCAAGAGCTACGGCACTGCCTGTGCTGAGTGCTGCCTGGCCAGGGACCCGTACTGTGCCTGGGATGGCACTGCCTGCACCCGCTACCAGCCCTCGGGCAAGCGCCGCCACGTCCGCCACACCAGCTCTGTGCACCAGTGCCTGGACCAGAACCTGACTG
Seq A exon
TGGATGACTTGGAGCATGTTGAAGAGAAGGTGCTGTATGGCATGGAGCACAACAGCACCTTCCTGGAGTGTGTGCCCCGCTCCCCGCAGGCCAGCGTGCAGTGGTTTGTGCAGAGACCCCCGGATGAGCAGAGGGATGAG
Seq C2 exon
GTAAAGACAGATGAGCGGGTCCTGCAGACAGAGCAAGGGCTGCTCTTCCGCCAGCTGCACCGCCGTGATGCCGGGGTCTACTACTGCAAGACACTGGAGCATGGCTTTACCCAGACGGTGGCCAAGACAGCCCTGGAGGTGCTTGGGGGCGAGCAGCTTGCCCGTGCTACACCCCGGCAAAGGGAGGACAGGCACCCACCCTGTCCTGAGCCCTGGCTGGCAGCACCTGCACCCAAAACCTGGTACAAGGACATCCTGCACCTCGCCAGCTCAGCCGACCGGCAGCGGGTGGAGGAGCAGTGCCTGCGCCTGTGGTGCGGCCACCGCAAGGGCAAGATGGCCAAGGGCAAGCACGCGCTGGCTGGCATGGATGTGGGCAAGAAGGGGCGCGTGGCCAAACCACACGGTGAGAGGATCCGTGTGCCCCGGCAAGCTGCAGCCACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004476-'10-13,'10-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.255 C2=0.419
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(96.4=75.0)
A:
PF0143720=PSI=PD(1.8=2.1),PF0768612=V-set=PU(48.4=95.7)
C2:
PF0768612=V-set=PD(49.5=30.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGTGCAAGAGCTACGG
R:
CAGTAGTAGACCCCGGCATCA
Band lengths:
252-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]