HsaEX0057080 @ hg38
Exon Skipping
Gene
ENSG00000010319 | SEMA3G
Description
semaphorin 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr3:52433053-52438199:-
Coord C1 exon
chr3:52437971-52438199
Coord A exon
chr3:52437527-52437666
Coord C2 exon
chr3:52433053-52436073
Length
140 bp
Sequences
Splice sites
3' ss Seq
CAACCTCTGCCTCTCTCCAGAAG
3' ss Score
8.99
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CAAATGCTATACGTGGGCTCTCGGCTGGGTGTGGCCCAGCTGCGGCTGCACCAATGTGAGACTTACGGCACTGCCTGTGCAGAGTGCTGCCTGGCCCGGGACCCATACTGTGCCTGGGATGGTGCCTCCTGTACCCACTACCGCCCCAGCCTTGGCAAGCGCCGGTTCCGCCGGCAGGACATCCGGCACGGCAACCCTGCCCTGCAGTGCCTGGGCCAGAGCCAGGAAG
Seq A exon
AAGAGGCAGTGGGACTTGTGGCAGCCACCATGGTCTACGGCACGGAGCACAATAGCACCTTCCTGGAGTGCCTGCCCAAGTCTCCCCAGGCTGCTGTGCGCTGGCTCTTGCAGAGGCCAGGGGATGAGGGGCCTGACCAG
Seq C2 exon
GTGAAGACGGACGAGCGAGTCTTGCACACGGAGCGGGGGCTGCTGTTCCGCAGGCTTAGCCGTTTCGATGCGGGCACCTACACCTGCACCACTCTGGAGCATGGCTTCTCCCAGACTGTGGTCCGCCTGGCTCTGGTGGTGATTGTGGCCTCACAGCTGGACAACCTGTTCCCTCCGGAGCCAAAGCCAGAGGAGCCCCCAGCCCGGGGAGGCCTGGCTTCCACCCCACCCAAGGCCTGGTACAAGGACATCCTGCAGCTCATTGGCTTCGCCAACCTGCCCCGGGTGGATGAGTACTGTGAGCGCGTGTGGTGCAGGGGCACCACGGAATGCTCAGGCTGCTTCCGGAGCCGGAGCCGGGGCAAGCAGGCCAGGGGCAAGAGCTGGGCAGGGCTGGAGCTAGGCAAGAAGATGAAGAGCCGGGTGCATGCCGAGCACAATCGGACGCCCCGGGAGGTGGAGGCCACGTAGAAGGGGGCAGAGGAGGGGTGGTCAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010319_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.191 C2=0.269
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(96.7=76.6)
A:
PF0143720=PSI=PD(1.6=2.1),PF0004720=ig=PU(48.4=63.8)
C2:
PF0004720=ig=PD(48.4=19.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACTGTGCCTGGGATGGTG
R:
CACAGTCTGGGAGAAGCCATG
Band lengths:
246-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development