RnoEX0079298 @ rn6
Exon Skipping
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7311629-7315390:+
Coord C1 exon
chr16:7311629-7311863
Coord A exon
chr16:7312107-7312237
Coord C2 exon
chr16:7313504-7315390
Length
131 bp
Sequences
Splice sites
3' ss Seq
CAGCCTGGTCCTCTCTACAGAAG
3' ss Score
6.99
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CAAACGCTGTATGTGGGCTCTCCACTGGGCGTGGCCCGGCTGCAGCTGCACCAGTGTGAGACTTATGGCAGTGCCTGCGCTGAGTGCTGCCTGGCCCGGGACCCATACTGTGCTTGGGACGGCACTTCCTGTGCCCGCTACCGCCCCAGCTCGGGCAAGCGCAGGTTCCGACGACAGGACATCCGACATGGCAATCCTGCTGTGCAGTGTCTGGGCCAGGGCCAGAGCCAAGACA
Seq A exon
AAGCCTCGGGACTGGTGACCAGAGTCTTTGGCACAGAGCACAACAGTACCTTCCTTGAGTGCCGGCCCAAGTCTCCCCAGGCTGCAGTGCGCTGGTTCTTACAAAGGCCAGGGGATAAGGGGGCTGACCAG
Seq C2 exon
GTGAAGACAGATGAGCGAGTTGTGCAGACGGACCAGGGGCTTCTGTTCCGAAGGCTCAGCCGCCTTGATGCAGGGAACTACACCTGTACCACTCTGGAGCACGGCTTCTCCCAGACCGTGGTTCGTTTTGCCCTGGAGGTGATTGCGGCTGTGCAGCTGGACAGCCTGTTCCTTCGGGAGCCAAGGCTGGAGGAGCCCTCAGCCTGGCGAAGTGTGGCTTCTGCCTCACCCAAGACTTGGTATAAGGACATCCTTCAGCTCACTGGTTTCGCCAACCTGCCCCGCGTGGATGAGTACTGCGAACGTGTGTGGTGCAGGGGTGTCGGGGAGCGCTCGGGCTCCTTCCGCGGAAAGGGAAAGCAGGCGAAGGGCAAGAGCTGGGCGGGGCTAGAGCTGGGCAGGAAGATGAAGAGCCGGGTGCAGGCTGAGCACAATCGGACCCCCCGGGAGGTAGAAGCCACATAGAAGATGGCTGAGGTGGGGGTGGTCGGACTGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952-'19-19,'19-17,20-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.023 C2=0.156
Domain overlap (PFAM):
C1:
PF0143720=PSI=WD(100=78.5)
A:
PF0143720=PSI=PD(0.1=0.0),PF0004720=ig=PU(48.4=68.2)
C2:
PF0004720=ig=PD(48.4=19.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCACCAGTGTGAGACTTA
R:
CTGAGCCTTCGGAACAGAAGC
Band lengths:
250-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]