MmuEX6040479 @ mm10
Exon Skipping
Gene
ENSMUSG00000021904 | Sema3g
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:MGI Symbol;Acc:MGI:3041242]
Coordinates
chr14:31225919-31230350:+
Coord C1 exon
chr14:31225919-31226153
Coord A exon
chr14:31226386-31226519
Coord C2 exon
chr14:31227742-31230350
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGGCCTGATCCTCTCTACAGAAG
3' ss Score
8.34
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CAAACGCTGTATGTGGGCTCTCCACTGGGTGTGGCCCGGCTGCAGCTGCACCAGTGTGAGACTTACGGCAGTGCCTGTGCTGAGTGCTGCCTGGCCCGGGACCCATACTGTGCTTGGGATGGCACTGCCTGTGCCCGCTACCGCCCCAGCTCTGGCAAGCGCAGGTTCCGTCGGCAGGACATACGCCATGGCAACCCTGCTGTGCAGTGTCTGGGCCAGGGCCAGAGCCAAAACA
Seq A exon
AAGCAGCTTCGGGGCTCATGACCAGAGTCTTTGGCACAGAGCACAACAGCACCTTCCTTGAGTGCCTGCCCAAGTCTCCTCAGGCTGCAGTGCGCTGGTTCTTACAAAGGCCAGGGGATAAGGGGACTGACCAG
Seq C2 exon
GTGAAGACAGATGAGAGAGTTGTGCAGACGGCCCAAGGGCTGCTGTTCCGAAGGCTCAGCCGCCATGACGCAGGAAACTACACTTGCACCACTCTGGAACATGGCTTCTCCCAGACCGTGGTCCGTTTTGCCCTGGAGGTGATTGCAGCTGTGCAACTGGACAGCCTGTTCCTTCGGGAGTCAAGGCTAGAGGAGCCCTCAGCCTGGGGAAGCCTGGCCTCTGCCTCCCCCAAGACTTGGTATAAGGACATCCTTCAGCTCACGGGCTTCGCCAACCTGCCCCGTGTGGATGAGTACTGTGAACGTGTATGGTGCAGGGGTGTCGGGGAGCGCTCAGGCTCCTTCCGCGGAAAGGGAAAGCAAGCGAAGGGCAAGAGCTGGGCAGGGCTGGAACTGGGCAAGAAGATGAAGAGCAGGGTGCTGGCTGAGCACAATCGGACACCCCGGGAGGTAGAAGCCACATAGAAGATGACTGAGGAGCAGGTGGTCGGGCTGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021904-'13-18,'13-16,24-18=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.063 A=0.067 C2=0.123
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(96.8=77.2)
A:
PF0143720=PSI=PD(1.6=2.2),PF0004720=ig=PU(48.4=66.7)
C2:
PF0004720=ig=PD(48.4=19.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATACTGTGCTTGGGATGG
R:
TGGGAGAAGCCATGTTCCAGA
Band lengths:
247-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types