GgaEX6009854 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNM9]
Coordinates
chr12:2656645-2657378:+
Coord C1 exon
chr12:2656645-2656709
Coord A exon
chr12:2656812-2656942
Coord C2 exon
chr12:2657010-2657378
Length
131 bp
Sequences
Splice sites
3' ss Seq
CCCGTCCCGTTCCCATGCAGGGA
3' ss Score
10.61
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GCGTGCCCGGTGCCAGGACGTGCTGAAGGCTGATGTGCTCAGCCAGTGCCAGGACACAGCAGAGG
Seq A exon
GGATGGCGGCTGTGGAGCAGCCGGTGTTCGGTGTGGAGAAGAACTCCACGTTCCTGGAGTGCCGGGCGCGCTCCCCGCAGACAGCAGTGCGGTGGCTGGCACGGCGCGGAGAGGGGCCGGGGCTGAGCGAG
Seq C2 exon
GTGAGGAGCGGCGGGCGCGTGGCGGTGCTGGAGCAGGGGCTGCTGATCCGCCAGCTGGGCCGGGAGGACGCCGGCACCTACGAGTGCCAGGCTGTGGAGCACTCCTTCTCCCGGCCCCTCACCCGCTACAGCCTGCACGTCATCCGGCACGAGGCCGCGGAGCCGCCGCATCGCCGGGGTAAAGGGGCTGAGAGCACCTGGACGGACCCGCGGGCGCTGGGGGCACCGGGCAGCGGCAGCCTCGAATCCTACTGCAGCGCACTGCGGCTCCGGGAGCGGCAGCGGCAGAAGGCCTGGCAGCAGAAGTGGCAGCACCGCGCCCCCGAGAGCAAGAGCAGCCGTGTGCGCCGGCAGCCCCGCAGGCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203-'15-25,'15-24,16-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.459
Domain overlap (PFAM):
C1:
PF0143720=PSI=FE(36.7=100)
A:
PF0143720=PSI=PD(3.3=4.5),PF0767911=I-set=PU(46.1=93.2)
C2:
PF0767911=I-set=PD(51.7=37.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGCTGAAGGCTGATGTG
R:
TGCTCTCAGCCCCTTTACCC
Band lengths:
245-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]