RnoEX0081863 @ rn6
Exon Skipping
Gene
ENSRNOG00000047781 | Slc25a23
Description
solute carrier family 25 member 23 [Source:RGD Symbol;Acc:1588586]
Coordinates
chr9:9991732-9999428:+
Coord C1 exon
chr9:9991732-9991843
Coord A exon
chr9:9995123-9995290
Coord C2 exon
chr9:9999278-9999428
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTAACAGAGTTCTCACCTAGGTA
3' ss Score
0.78
5' ss Seq
GAGGTCTGT
5' ss Score
5.39
Exon sequences
Seq C1 exon
CATGGACCGTGATGGCACCATGACCATTGATTGGCAGGAATGGCGAGACCACTTTCTGCTGCACTCTCTGGAGAATGTGGAGGATGTCCTTTATTTCTGGAAGCATTCAACA
Seq A exon
GTACTAAAGACTCGGCTGACTCTACGCAGAACTGGCCAGTACAAGGGGCTCCTGGACTGTGCAAGGCGAATCTTAGAGCGTGAAGGGCCACGCGCCTTCTACCGTGGCTACCTGCCTAATGTGCTGGGCATCATTCCCTATGCAGGAATCGACCTAGCTGTCTACGAG
Seq C2 exon
ACCCTGAAGAATCGCTGGCTTCAGCAGTACAGCCACGAATCAGCTAACCCAGGCATTCTTGTGCTCCTGGCCTGTGGCACCATCTCCAGCACCTGTGGCCAGATTGCCAGTTACCCTCTGGCACTGGTCCGTACCCGAATGCAGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047781_MULTIEX1-4/4=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(40.0=84.2)
A:
PF0015322=Mito_carr=FE(59.1=100)
C2:
PF0015322=Mito_carr=PD(9.7=17.6),PF0015322=Mito_carr=PU(37.9=70.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGATGGCACCATGACCATT
R:
CTGCATTCGGGTACGGACC
Band lengths:
249-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]