RnoEX0082280 @ rn6
Exon Skipping
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60262392-60265827:-
Coord C1 exon
chr14:60265716-60265827
Coord A exon
chr14:60263236-60263308
Coord C2 exon
chr14:60262392-60262487
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTTGTGTTGGAAACCTTCAGCTT
3' ss Score
2.6
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TGCTGTCAGTCCGCGCTGCCATCCCCATCATCATGGGTGCTAACATCGGGACCTCCATCACCAACACGATTGTGGCACTTATGCAGGCAGGAGACAGAAATGAGTTCAGAAG
Seq A exon
CTTCCAGAATGGAGAAGATGCCCCAGACATTCTGAAAGTCATAACAGACCCCTTCACAAAGCTCATCATCCAG
Seq C2 exon
CTGGATAAAAAAGTCATCCAACAAATTGCAATGGGTGACTCAGAAGCCCAGAACAAGAGCCTGATCAAGATCTGGTGTAAAACTATAAGCAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626-'5-9,'5-8,6-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
A:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCATCCCCATCATCATG
R:
ACACCAGATCTTGATCAGGCTCT
Band lengths:
176-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]