GgaEX0021119 @ galGal3
Exon Skipping
Gene
ENSGALG00000014372 | Q6TQF9_CHICK
Description
NA
Coordinates
chr4:75891306-75893876:-
Coord C1 exon
chr4:75893765-75893876
Coord A exon
chr4:75892018-75892213
Coord C2 exon
chr4:75891306-75891401
Length
196 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTAATTTCTTGTAGGGC
3' ss Score
10.01
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
TGCTGACTGTACAATCAGCTATTCCTATCATTATGGGGGCAAACATTGGCACCTCAGTTACAAACACAATTGTGGCGCTCATGCAAGCCGGGGACAGGAATGAATTTAGAAG
Seq A exon
GGCCTTTGCTGGGGCAACAATCCATGATTTCTTTAACTGGCTTGCTGTGTTTGCATTGTTGCCCATTGAAGTCATTTCTGGCTATCTTTACCATCTCACCAATGTTATAGTTGAGTCCTTTCATCTTGAAAGTGGTGAAGATGCCCCTGAGCTACTAAAAGTCATCACAGACCCTTTTACAAAGCTCATCATCGAG
Seq C2 exon
CTTGATAAATCTGTAATAAATGCAATCGCTACTAATGACGAATCAGCAAAAAACAAAAGCCTGGTAAAGGTTTGGTGCATAACTGAAACCAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014372-'8-9,'8-7,9-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(26.4=100)
A:
PF0269010=Na_Pi_cotrans=PD(26.4=56.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGACTGTACAATCAGCTATTCC
R:
TGGTTTCAGTTATGCACCAAACC
Band lengths:
203-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]