MmuEX6017690 @ mm9
Exon Skipping
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53452604-53456133:+
Coord C1 exon
chr5:53452604-53452715
Coord A exon
chr5:53455088-53455283
Coord C2 exon
chr5:53456038-53456133
Length
196 bp
Sequences
Splice sites
3' ss Seq
GTGGCTTTCTCTTCCCATAGGGC
3' ss Score
11.25
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TGCTGACGGTTCGGGCTGCCATCCCCATCATCATGGGCGCTAACATTGGAACCTCCATCACCAACACGATCGTGGCGCTTATGCAGGCAGGAGACAGAAATGAGTTCAGAAG
Seq A exon
GGCATTTGCAGGAGCCACTGTTCATGACTTCTTCAACTGGCTCTCTGTGTTCGTGCTCTTGCCTCTGGAGGCTGCCACCCATTACCTGGAGATCCTGACCAACCTTGTGTTAGAAACCTTCAAGTTCCAGAATGGAGAAGATGCCCCAGACATTCTGAAAGTCATCACAGACCCCTTCACAAAGCTCATCATCCAG
Seq C2 exon
CTGGATAAAAAGGTCATCCAACAAATCGCAATGGGTGACTCAGCGGCCCAGAACAAGAGCCTGATCAAGATCTGGTGTAAAAGTATAACCAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
A:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGACGGTTCGGGCTG
R:
CACATTGGTTATACTTTTACACCAGA
Band lengths:
208-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: