HsaEX6083855 @ hg38
Exon Skipping
Gene
ENSG00000157765 | SLC34A2
Description
solute carrier family 34 member 2 [Source:HGNC Symbol;Acc:HGNC:11020]
Coordinates
chr4:25667880-25670833:+
Coord C1 exon
chr4:25667880-25667991
Coord A exon
chr4:25669647-25669842
Coord C2 exon
chr4:25670738-25670833
Length
196 bp
Sequences
Splice sites
3' ss Seq
TCGGGGTTTCCCTCCCATAGAGC
3' ss Score
8.26
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
TGCTCACTGTTCGGGCTGCCATCCCCATTATCATGGGGGCCAACATTGGAACGTCAATCACCAACACTATTGTTGCGCTCATGCAGGTGGGAGATCGGAGTGAGTTCAGAAG
Seq A exon
AGCTTTTGCAGGAGCCACTGTCCATGACTTCTTCAACTGGCTGTCCGTGTTGGTGCTCTTGCCCGTGGAGGTGGCCACCCATTACCTCGAGATCATAACCCAGCTTATAGTGGAGAGCTTCCACTTCAAGAATGGAGAAGATGCCCCAGATCTTCTGAAAGTCATCACTAAGCCCTTCACAAAGCTCATTGTCCAG
Seq C2 exon
CTGGATAAAAAAGTTATCAGCCAAATTGCAATGAACGATGAAAAAGCGAAAAACAAGAGTCTTGTCAAGATTTGGTGCAAAACTTTTACCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157765-'18-16,'18-15,20-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.7=100)
A:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTTCGGGCTGCCATC
R:
TGTTGGTAAAAGTTTTGCACCA
Band lengths:
202-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains