DreEX0072597 @ danRer10
Exon Skipping
Gene
ENSDARG00000036864 | slc34a2b
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030709-1]
Coordinates
chr23:1071812-1073872:+
Coord C1 exon
chr23:1071812-1071923
Coord A exon
chr23:1072038-1072233
Coord C2 exon
chr23:1073777-1073872
Length
196 bp
Sequences
Splice sites
3' ss Seq
CGTTTGCTGGTCTTGGTCAGGGC
3' ss Score
4.92
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TGCTGGAGGTGAAGTCAGCAGTGCCTATCATCATGGGTGCAAATATCGGCACTTCAGTAACAAACACTATTGTGGCTGTGATGCAAGCTGGAGACCGCAATGAGTTTCGCAG
Seq A exon
GGCTTTTGCGGGGGCGACGGTGCATGACTTCTTCAACTGGCTGTCGGTGCTGGTGCTCCTGCCTCTGGAAGTGGCCTCAGGGATGCTCTACAGACTCACCAAACTTGTGATCGATTCCTTCAACATCCAGACGGGCGCAGACGCTCCAGACCTGCTGAAAGTCATCACAGAGCCGCTCACCAAGAACATCATTGAG
Seq C2 exon
CTGGACACCTCTGTGATTCGTGACATCGCCACTGGAGACCCTGCTGCCCGAAACAAAAGTTTGATCAAGATCTGGTGTAAAACGGAAAAAATTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036864-'8-9,'8-7,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(26.4=100)
A:
PF0269010=Na_Pi_cotrans=PD(26.4=56.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGTGAAGTCAGCAGTG
R:
TCCGTTTTACACCAGATCTTGA
Band lengths:
196-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]