BtaEX6039913 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020351 | SLC34A1
Description
Bos taurus solute carrier family 34 (sodium phosphate), member 1 (SLC34A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001103223]
Coordinates
chr7:40242294-40242899:+
Coord C1 exon
chr7:40242294-40242405
Coord A exon
chr7:40242527-40242722
Coord C2 exon
chr7:40242804-40242899
Length
196 bp
Sequences
Splice sites
3' ss Seq
AATGTGGCCTCCCTGCCCAGGGC
3' ss Score
7.69
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
Exon sequences
Seq C1 exon
TGCTGGAGGTGAGCTCTGCCATCCCCATCATCATGGGCTCCAACATCGGCACCTCCGTCACCAACACCATTGTGGCCCTGATGCAGGCGGGGGACAGAACTGACTTCCGGCG
Seq A exon
GGCCTTCGCGGGGGCTACTGTACACGACTGCTTTAACTGGTTGTCAGTTCTGGTGCTGCTGCCCCTGGAGGCTGCCACAGGGTACCTGCACTGCATCACTCGACTTGTGGTGGCCTCCTTCAACATCCACGGCGGCCGCGATGCCCCTGACCTGCTCAAGATCATCACGGAGCCCTTCACTAAGCTCATCATCCAG
Seq C2 exon
CTGGACAAGTCTGTGATTACCAGCCTTGCCTCGGGGGACGAGTCCCTGAGAAATCACAGCCTCATCCGGGTCTGGTGTTACCCAGACCCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020351-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.5=100)
A:
PF0269010=Na_Pi_cotrans=PD(29.0=63.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGTGAGCTCTGCCATC
R:
CTCTGTGGGGTCTGGGTAACA
Band lengths:
206-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]