DreEX6056653 @ danRer10
Exon Skipping
Gene
ENSDARG00000028824 | slc34a1a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-101006-3]
Coordinates
chr14:828273-830748:-
Coord C1 exon
chr14:830637-830748
Coord A exon
chr14:828693-828888
Coord C2 exon
chr14:828273-828368
Length
196 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGTAGGGC
3' ss Score
9.09
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGCTGGAAGTGAAATCTGCCGTCCCCATCATCATGGGCTCCAACATTGGCACGTCGGTCACCAACACCATCGTGGCTCTGATGCAGGCGGGGGAGAGGAACGAGTTCAAGCG
Seq A exon
GGCATTTGCGGGAGCAACGATCCACGACTGTTTTAACTGGCTGTCTGTGCTGGTTCTGCTGCCGCTGGAGGTGTTTTCGGGTCTGCTCAGTTTTCTGGCCAGAGTGACGGTCAGCAGCTTTCAGATGCACAGCGGAGAGGAAGCTCCAGAGCTGCTCAAGACCCTCACTGAGCCCTTCACCACACTCATCATACAG
Seq C2 exon
CTGGATAAATCCGTCATCACAGGCATTGCTCTGGGCGACGAGTCCATGCGGAATCACAGCCTCATCAAAGTCTGGTGCAAGTCCTCCGTCTTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028824-'7-6,'7-5,9-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(24.7=100),PF061616=DUF975=FE(29.6=100)
A:
PF0269010=Na_Pi_cotrans=PD(31.3=71.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGGAAGTGAAATCTGCCG
R:
CAAGACGGAGGACTTGCACC
Band lengths:
205-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]