GgaEX1053289 @ galGal4
Exon Skipping
Gene
ENSGALG00000003075 | SLC34A1
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 1 [Source:HGNC Symbol;Acc:HGNC:11019]
Coordinates
chr13:9449660-9450572:+
Coord C1 exon
chr13:9449660-9449803
Coord A exon
chr13:9450075-9450270
Coord C2 exon
chr13:9450477-9450572
Length
196 bp
Sequences
Splice sites
3' ss Seq
ACGCAGACTCCTCCATGCAGGGC
3' ss Score
5.01
5' ss Seq
CAGGTCTCC
5' ss Score
0.85
Exon sequences
Seq C1 exon
GCAAAGTGGCAGGGGACATCTTCAAGGACAACGCCATCCTCTCCAACCCCGTAGCCGGGCTGGTGGTGGGCATCCTGGTGACCGTGCTGGTGCAGAGCTCCTCCACCTCCACCTCCATCATTGTCAGCATGGTCTCCTCGGGGC
Seq A exon
GGCTTTTGCTGGTGCTACAGTGCACGACTGTTTCAACTGGCTGTCAGTGTTGGTCCTGCTGCCGCTGGAGGTGGTGAGTGGGTACCTGCACCACGTCACCCGCCTGGTGGTCGCCACCTTCAACATCCGCAGTGGGAAGGATGCCCCTGACCTGCTGAAAATCATCACGGAGCCCTTCACCAAACTCATCATCCAG
Seq C2 exon
CTGGACAAGTCGGTGATCACAGGCATTGCGACAGGGGATGAGAGCCTGCGCAACCGCAGCCTCATCCGCATGTGGTGCGGCCCCGCACCTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003075_MULTIEX2-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(33.3=100)
A:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGTGGCAGGGGACATCTT
R:
CCACATGCGGATGAGGCTG
Band lengths:
218-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]