MmuEX6058584 @ mm9
Exon Skipping
Gene
ENSMUSG00000021490 | Slc34a1
Description
solute carrier family 34 (sodium phosphate), member 1 [Source:MGI Symbol;Acc:MGI:1345284]
Coordinates
chr13:55504029-55504700:+
Coord C1 exon
chr13:55504029-55504140
Coord A exon
chr13:55504266-55504461
Coord C2 exon
chr13:55504605-55504700
Length
196 bp
Sequences
Splice sites
3' ss Seq
AATGTGACGTCCCTGCTCAGGGC
3' ss Score
6.74
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGTTGGAGGTGAGCTCCGCCATTCCGATCATCATGGGCTCCAACATCGGAACCTCTGTCACCAACACCATTGTGGCCCTGATGCAGGCAGGGGACAGGACTGACTTCAGGCG
Seq A exon
GGCTTTTGCAGGGGCGACCGTGCATGACTGTTTTAACTGGCTGTCTGTTCTGGTCCTACTGCCCCTGGAGGCTGCCACGGGCTACCTACACCATGTCACCGGGCTTGTGGTTGCTTCCTTCAACATCCGAGGTGGCCGTGATGCCCCCGACCTTCTCAAAGTCATCACAGAGCCCTTCACAAGACTCATCATCCAG
Seq C2 exon
CTGGACAAGTCTGTGATCACCAGCATTGCCGTGGGGGATGAGTCCCTGAGGAATCACAGTCTCATTCGGATTTGGTGTCACCCAGACACAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021490-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.5=100)
A:
PF0269010=Na_Pi_cotrans=PD(29.0=63.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGAGGTGAGCTCCGC
R:
CTCTGTTGTGTCTGGGTGAC
Band lengths:
208-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: