RnoEX0082278 @ rn6
Exon Skipping
Gene
ENSRNOG00000015262 | Slc34a1
Description
solute carrier family 34 member 1 [Source:RGD Symbol;Acc:3708]
Coordinates
chr17:9758966-9759599:-
Coord C1 exon
chr17:9759488-9759599
Coord A exon
chr17:9759168-9759363
Coord C2 exon
chr17:9758966-9759061
Length
196 bp
Sequences
Splice sites
3' ss Seq
AATGTGATATCCCTGCTCAGGGC
3' ss Score
6.9
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGTTGGAGGTGAGCTCCGCCATTCCGATAATCATGGGCTCCAACATCGGGACCTCTGTCACCAACACCATTGTGGCCCTGATGCAGGCGGGGGACAGGACTGACTTCAGGCG
Seq A exon
GGCTTTTGCAGGGGCAACAGTGCATGACTGCTTTAACTGGCTGTCTGTTCTGGTCCTGCTGCCCCTGGAGGCTGCCACGGGCTACCTGCACCACGTCACCGGGCTTGTGGTTGCCTCCTTCAACATCCGTGGTGGCCGTGATGCCCCTGACCTTCTCAAGGTTATCACAGAGCCCTTCACAAAGCTTATCATCCAG
Seq C2 exon
CTGGACAAGTCTGTGATTACCAGCATTGCCGTGGGGGATGAGTCCCTGAGGAATCACAGTCTCATTCGGATTTGGTGTCAACCAGAGACAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015262_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=FE(25.5=100)
A:
PF0269010=Na_Pi_cotrans=PD(29.0=63.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGAGGTGAGCTCCGC
R:
TCTTTTGTCTCTGGTTGACACC
Band lengths:
207-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]