MmuEX6017690 @ mm10
Exon Skipping
Gene
ENSMUSG00000029188 | Slc34a2
Description
solute carrier family 34 (sodium phosphate), member 2 [Source:MGI Symbol;Acc:MGI:1342284]
Coordinates
chr5:53061365-53064894:+
Coord C1 exon
chr5:53061365-53061476
Coord A exon
chr5:53063849-53064044
Coord C2 exon
chr5:53064799-53064894
Length
196 bp
Sequences
Splice sites
3' ss Seq
GTGGCTTTCTCTTCCCATAGGGC
3' ss Score
11.25
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
TGCTGACGGTTCGGGCTGCCATCCCCATCATCATGGGCGCTAACATTGGAACCTCCATCACCAACACGATCGTGGCGCTTATGCAGGCAGGAGACAGAAATGAGTTCAGAAG
Seq A exon
GGCATTTGCAGGAGCCACTGTTCATGACTTCTTCAACTGGCTCTCTGTGTTCGTGCTCTTGCCTCTGGAGGCTGCCACCCATTACCTGGAGATCCTGACCAACCTTGTGTTAGAAACCTTCAAGTTCCAGAATGGAGAAGATGCCCCAGACATTCTGAAAGTCATCACAGACCCCTTCACAAAGCTCATCATCCAG
Seq C2 exon
CTGGATAAAAAGGTCATCCAACAAATCGCAATGGGTGACTCAGCGGCCCAGAACAAGAGCCTGATCAAGATCTGGTGTAAAAGTATAACCAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029188-'12-13,'12-11,15-13=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(14.3=84.6)
A:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGACGGTTCGGGCTG
R:
CACATTGGTTATACTTTTACACCAGA
Band lengths:
208-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types