RnoEX0082874 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142442869-142446930:+
Coord C1 exon
chr7:142442869-142443002
Coord A exon
chr7:142444750-142444828
Coord C2 exon
chr7:142446825-142446930
Length
79 bp
Sequences
Splice sites
3' ss Seq
CATTATTTTCATCTATGAAGCCA
3' ss Score
3.96
5' ss Seq
TTAGTAAGC
5' ss Score
4.41
Exon sequences
Seq C1 exon
AGTGCAATCGAATCGTTGTTTGGAGCCTCCATGACGGGGATTGCCTACTCTCTGTTTGCTGGGCAGCCTCTCACCATCCTGGGAAGCACGGGCCCTGTGCTGGTGTTTGAAAAGATTTTGTTCAAATTCTGCAA
Seq A exon
CCATAGAAAAGCTGATTCACCTGGCCGAGACCTACCCCATCCACATGCACAGCCAGCTGGACCACCTGAGCCTTTATTA
Seq C2 exon
CTGCAGGTGTGCGCTCCCCGAGAATCCCAACAACCACACCTTACAGTACTGGAAGGAGCACAGCATCCCGACTGCAGACGTGAACTGGGCAAACCTGACTGTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879-'17-18,'17-17,18-18
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(8.5=100)
A:
PF0095516=HCO3_cotransp=FE(15.9=100)
C2:
PF0095516=HCO3_cotransp=PU(3.3=22.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGGATTGCCTACTCTCT
R:
TGCTGTGCTCCTTCCAGTACT
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]