DreEX6023330 @ danRer10
Exon Skipping
Gene
ENSDARG00000015531 | slc4a8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
Coordinates
chr6:40389700-40392333:+
Coord C1 exon
chr6:40389700-40389833
Coord A exon
chr6:40390466-40390711
Coord C2 exon
chr6:40392228-40392333
Length
246 bp
Sequences
Splice sites
3' ss Seq
GTCTACTTTTCTCTCTGTAGAGA
3' ss Score
9.72
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
AGTGCTATTGAGTCTCTTTTAGGAGCATCTATGACTGGAGTAGCATACTCTCTGTTTGCTGGACAGCCATTAACTATTCTGGGCAGCACTGGACCCGTCCTGGTCTTCGAAAAGATTCTCTTCAAGTTCTGCAA
Seq A exon
AGACTACGATCTCTCATACCTTTCCCTGCGCACATGTATAGGCCTTTGGACGGCTTTCCTGTGTCTGCTTCTTGTTGCAACGGATGCCAGCTCTTTAGTCTGTTACATCACACGTTTTACAGAGGAAGCTTTTGCTGCGCTCATTTGTCTTATCTTCATTTATGAAGCACTGGAGAAACTTTTCTATCTTGGAGAATTGTACCCGATCAACAGGCATTCCGATCTGGACAAACTCACCCTGGCCTA
Seq C2 exon
CTGTAGGTGTGCAGAGCCTGATAATCCCAGTAATAAAACACTGGAAGTGTGGAATCAGAGGAACATCACGGCCTCTGCAGTGCCATGGACCAACCTTACTGTAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015531-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(8.5=100)
A:
PF0095516=HCO3_cotransp=FE(15.9=100)
C2:
PF0095516=HCO3_cotransp=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTATTGAGTCTCTTTTAGGAGC
R:
ACAGTAAGGTTGGTCCATGGC
Band lengths:
236-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]