MmuEX6056562 @ mm9
Exon Skipping
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100626936-100630183:+
Coord C1 exon
chr15:100626936-100627069
Coord A exon
chr15:100628424-100628669
Coord C2 exon
chr15:100630078-100630183
Length
246 bp
Sequences
Splice sites
3' ss Seq
TGAGCCGTGGTGTCTTTCAGGGA
3' ss Score
8.44
5' ss Seq
TTAGTAAGC
5' ss Score
4.41
Exon sequences
Seq C1 exon
AGTGCGATTGAGTCGTTGTTTGGAGCGTCCATGACGGGGATTGCCTACTCTCTGTTTGCTGGGCAGCCTCTCACCATCCTGGGAAGCACGGGGCCCGTGCTGGTGTTTGAAAAGATTTTGTTCAAATTCTGCAA
Seq A exon
GGACTATGCCCTTTCGTACCTGTCCCTGCGGGCTCTCATCGGGCTGTGGACTGCCTTCCTGTGCATCGTCCTGGTGGCCACGGATGCCAGCTCCCTCGTCTGCTACATTACCCGCTTCACCGAGGAAGCGTTTGCCTCCCTGATTTGTATCATCTTCATCTATGAAGCCATAGAAAAGCTGATCCACCTGGCAGAGACCTACCCCATCCACATGCACAGCCAGCTGGACCACCTGAGCCTCTATTA
Seq C2 exon
CTGCAGGTGTGTGCTCCCGGAGAATCCAAACAACCACACCTTACAGTATTGGAAGGACCACAACATCCTGGCTGCCGAAGTGAACTGGGCAAACCTGACAGTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-'20-17,'20-16,21-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(15.3=100)
A:
PF0095516=HCO3_cotransp=FE(15.9=100)
C2:
PF0095516=HCO3_cotransp=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATTGAGTCGTTGTTTGGAGC
R:
GCTGACTGTCAGGTTTGCCC
Band lengths:
236-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: