GgaEX6047090 @ galGal3
Exon Skipping
Description
NA
Coordinates
chrE22C19W28_E50C23:846586-847970:-
Coord C1 exon
chrE22C19W28_E50C23:847837-847970
Coord A exon
chrE22C19W28_E50C23:846786-847031
Coord C2 exon
chrE22C19W28_E50C23:846586-846691
Length
246 bp
Sequences
Splice sites
3' ss Seq
GGGTTCCCCTCCCATCGCAGGGA
3' ss Score
8.67
5' ss Seq
CTAGTGGGT
5' ss Score
1.46
Exon sequences
Seq C1 exon
AGCGCCATGGAGTCACTGCTGGGCGCGTCCATGACTGGCGTTGTGTATTCCCTCTTTGCTGGCCAACCTCTCACCATCCTTGGCAGCACTGGCCCTGTTCTCGTGTTCGAGAAGATCCTCTACAAGTTCTGCAA
Seq A exon
GGACTACGCGCTCTCCTACCTGTCCCTGCGGACGTGCATTGGGCTGTGGACTGCCTTCCTCTGCATGGTGCTGGTGGCCACGGACGCCAGCTGCCTGGTCTGCTACATCACCCGCTTCACCGAGGAAGCCTTCGCTGCCCTCATCTGCATCATCTTCATCTACGAGGCTCTGGAGAAGCTCATCTGCCTGGGAGAGACCTACCCAGTGCACATGCACAGCCAGCTTGACTTCCTCACCCTCTACTA
Seq C2 exon
CTGTAAGTGTGAGGCTCCCACCCATCCCACCAACGAAACGCTGCACTTCTGGCAGAGCAATGAGATCAACCCTGCAGCCATCGCCTGGGAAAACCTCACCGTATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'10-10,'10-9,11-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.8=100)
A:
PF0095516=HCO3_cotransp=FE(21.9=100)
C2:
PF0095516=HCO3_cotransp=FE(9.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCATGGAGTCACTGCTG
R:
ATACGGTGAGGTTTTCCCAGG
Band lengths:
236-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]