MmuEX6056562 @ mm10
Exon Skipping
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100796505-100799752:+
Coord C1 exon
chr15:100796505-100796638
Coord A exon
chr15:100797993-100798238
Coord C2 exon
chr15:100799647-100799752
Length
246 bp
Sequences
Splice sites
3' ss Seq
TGAGCCGTGGTGTCTTTCAGGGA
3' ss Score
8.44
5' ss Seq
TTAGTAAGC
5' ss Score
4.41
Exon sequences
Seq C1 exon
AGTGCGATTGAGTCGTTGTTTGGAGCGTCCATGACGGGGATTGCCTACTCTCTGTTTGCTGGGCAGCCTCTCACCATCCTGGGAAGCACGGGGCCCGTGCTGGTGTTTGAAAAGATTTTGTTCAAATTCTGCAA
Seq A exon
GGACTATGCCCTTTCGTACCTGTCCCTGCGGGCTCTCATCGGGCTGTGGACTGCCTTCCTGTGCATCGTCCTGGTGGCCACGGATGCCAGCTCCCTCGTCTGCTACATTACCCGCTTCACCGAGGAAGCGTTTGCCTCCCTGATTTGTATCATCTTCATCTATGAAGCCATAGAAAAGCTGATCCACCTGGCAGAGACCTACCCCATCCACATGCACAGCCAGCTGGACCACCTGAGCCTCTATTA
Seq C2 exon
CTGCAGGTGTGTGCTCCCGGAGAATCCAAACAACCACACCTTACAGTATTGGAAGGACCACAACATCCTGGCTGCCGAAGTGAACTGGGCAAACCTGACAGTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-'26-41,'26-31,35-41=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(12.9=100)
A:
PF0095516=HCO3_cotransp=FE(15.9=100)
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATCTTGCCTCTCCAGTGG
R:
GGGCCCTCGAAACTATGTACG
Band lengths:
294-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types