RnoEX0090065 @ rn6
Exon Skipping
Gene
ENSRNOG00000019222 | Tfdp1
Description
transcription factor Dp-1 [Source:RGD Symbol;Acc:1560344]
Coordinates
chr16:81122266-81127257:+
Coord C1 exon
chr16:81122266-81122432
Coord A exon
chr16:81123024-81123102
Coord C2 exon
chr16:81125951-81127257
Length
79 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTTCTGTTTTTTCAGAGA
3' ss Score
9.89
5' ss Seq
CAGGTGACA
5' ss Score
5.49
Exon sequences
Seq C1 exon
ATTTGAGTATCTGTTCAACTTTGACAACACGTTTGAAATCCACGATGATATCGAGGTGCTCAAGCGCATGGGCATGGCCTGTGGGCTGGAGTCGGGCAGCTGCTCTGCTGAAGACCTCAAGGTGGCGAGAAGTCTGGTACCAAAAGCTCTAGAACCGTATGTGACAG
Seq A exon
AGATGGCTCAGGGATCCATTGGCGGAGTATTTGTCACGACAACAGGTTCTACATCCAATGGCACAAGGCTTTCTGCCAG
Seq C2 exon
TGATTTGAGCAATGGTGCAGATGGGATGCTGGCCACGAGCTCCAATGGGTCTCAGTACAGCGGCTCCAGGGTGGAGACCCCTGTGTCCTACGTTGGGGAGGATGACGACGACGACGATGACTTTAATGAGAACGACGAGGAGGATTGATTACTCAACTGTAGACCCTTCTCCCCTCAGTCAGCTTCAGGAAAAACGTATAGAGAAAAGAAGCTTTTGAAGTGGGGCTTTCCGTTCTTTCTGGCCTACTCCCAAGAAGATGCCGCCGAGTTGTGGAGTTAGATATGCAGCTCCAAGTAAGGAGTGTGCCCGCGGTGTGAGCGAGCTGTGGATGTGTCGTGAAGCCAGCGTGCTAGAGCAGAGCCTGTATCTACCTTTTAGGATTTTATGGTTCCTCTTTCTTTCTTTTTTTTGTTTATCTTCTTTCCTTTCTTTTTTAAGTTTGAAGCTTGTTTTGCCCCTCAACAGTTGTTGCTGGTTTGCTGAGGAGGCTGTGCTGCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019222-'22-24,'22-21,24-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.407 C2=0.980
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.6=100)
A:
PF087815=DP=PD(5.5=29.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGGCGAGAAGTCTGGTA
R:
GTCATCGTCGTCGTCGTCATC
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]