GgaEX6005342 @ galGal3
Exon Skipping
Gene
ENSGALG00000016823 | F1P3E8_CHICK
Description
NA
Coordinates
chr1:141538564-141542221:-
Coord C1 exon
chr1:141542055-141542221
Coord A exon
chr1:141541362-141541443
Coord C2 exon
chr1:141538564-141538973
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACGTATGTTTGTTTTTACAGAAA
3' ss Score
9.47
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTTGAGTATCTATTTAATTTTGACAATACTTTTGAAATTCATGATGATATAGAAGTACTAAAACGAATGGGAATGGCCTGTGGGCTAGAATCTGGAAGCTGTTCAGCAGAGGACCTAAAAATTGCAAGGAGTTTGGTTCCCAAAGCTTTGGAACCATATGTGACAG
Seq A exon
AAATGGCTCAGGGATCAATCAGCAGTGTATATGTCACATCTTCGTCAGGTTCCACATCAAATGGCACAAGATTTTCAGCCAG
Seq C2 exon
TGACTTTTCCAATGGTGGAGATGGGATGTTGGCTACAAGTTCCAATGGATCTCAGTACAGTGGCTCCAGAGTTGAAACACCAGTTTCTTATGTGGGGGATGACGATGATGACGATGACGACTTTAATGAAAACGATGACGACGACTGATGCCCTTTGCTTGTAGACTTGTTAAAATTCAGCAAGCTTCAGGAATAAATTGTTCTAGGGAGAGAAGTCTCAAATAACTTTGCCCCATCCCTCAAGGAAAACGTTGGTAAGCAGTTCTGAGTTTAGAAATGCACCTCTGATAAGCAAGCGAGGATTGTTTTATGTAGGATATTTTTAAATGTGGTGTGGATGTGTGTTTTTGATACCAGTGTGTTAATGCAGAGCCTTTATTTACTCTTGGTTTAGGGGTTTTTGGTTTATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823-'16-16,'16-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.837
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.6=100)
A:
PF087815=DP=PD(5.5=28.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGAATGGGAATGGCCTGTG
R:
ACTCTGGAGCCACTGTACTGA
Band lengths:
177-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]