BtaEX6057616 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019645 | TFDP1
Description
Bos taurus transcription factor Dp-1 (TFDP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076029]
Coordinates
chr12:90751577-90754997:+
Coord C1 exon
chr12:90751577-90751743
Coord A exon
chr12:90752325-90752403
Coord C2 exon
chr12:90753916-90754997
Length
79 bp
Sequences
Splice sites
3' ss Seq
CGTTTTCTTCCTCTTTGCAGAGA
3' ss Score
11.23
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTTTGAGTACCTGTTCAATTTCGACAACACGTTTGAGATCCATGACGACATCGAGGTGCTGAAGCGCATGGGCATGGCCTGCGGGCTGGAGTCCGGGAGCTGCTCCCCCGAGGACCTGAGGGTGGCCAGGAGCTTGGTGCCGAAGGCGCTGGAGCCTTACGTGACAG
Seq A exon
AGATGGCTCAGGGATCCCTCGGCGGTGTGTTTGTCGCGTCGGCAGTGTCGACCTCTAACGGCACGCGGCTGTCTGCCAG
Seq C2 exon
CGACCTGGCCAACGGCGCGGACGGGGCGCTGGCCACGAGCTCTAGCGGGTCGCAGTACAGCGGGTCCCGGGTGGAGACGCCAGTGTCGTGCGTCGGTGAGGACGACGAAGACGACGAGGACTTCAACGAGAATGAGGAGGAGGACTGAGCCGCCGCCCGCGGCCAGGAGCGCGCGGGGTGAGATGTCCGTTCCACGCCCTCCTCCCGGAAGAGCTCACCGACCTTCGGGCTCAGGGCGCTTCTGACGAGCCACTCGAGCCACTCGCCGTGCCCCGGGGGTCCCGACGAGCCGCCTGTGTTTGACACCGACGCACGACCTCTACTCTTTCGGATTTTGTGTTTTCGTTTGCTGTTTTTTAAGTTCAGGGTTCATTTCGCCCCCTGAGTTTGCTGAGTTTGCTGGAGAAGTTGTGCCACCTCCGTGCCGCCCGGCGAGCCCAGCACAGCGCTCGGGGGCACTGCGGGCCCGGCAGCGCCCAGCTCTGCTTCTCGACGTTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019645-'19-17,'19-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.148 C2=0.796
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.9=100)
A:
PF087815=DP=PD(4.9=25.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGCCTTACGTGACAG
R:
GGCTCAGTCCTCCTCCTCATT
Band lengths:
171-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]