DreEX0078381 @ danRer10
Exon Skipping
Gene
ENSDARG00000019293 | tfdp1a
Description
transcription factor Dp-1, a [Source:ZFIN;Acc:ZDB-GENE-040426-2883]
Coordinates
chr9:35155592-35159244:+
Coord C1 exon
chr9:35155592-35155758
Coord A exon
chr9:35155862-35155943
Coord C2 exon
chr9:35158176-35159244
Length
82 bp
Sequences
Splice sites
3' ss Seq
ATGGTGACTTCTACATGCAGAAA
3' ss Score
6.03
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTTTGAGTACCTCTTCAACTTTGATAGCATGTTTGAGATTCACGATGACATTGAGGTATTGAAGCGCATGGGCATGGCTTGTGGTCTTGAGGTGGGCAAGTGCTCTGCTGAAGACCTGAAGACTGCTAGGAGCTTGGTGCCCAAAGCCCTGGAGCCTTATGTCACAG
Seq A exon
AAATGGCACAGGGACCTATCAGTAATGTCTACATGACGGGGGCTTCATCTGCAAATGGAGGTGGCCGCTATCATGTAGGAGG
Seq C2 exon
TGACAGTGGGGCCGATGCTACAATGGCCTCTAGTTCTAATGACTCCCACTACAGCGGCTCTCGGGTGGAGACTCCCGTCTCTTACATGGGTGAGGACGATGACGACGACGATGAGTTTGATGAAAACGACGACGAGGACTAAAAGCTCAGCCCTCCATCAAACCTGTCCATCGTGCACAAGTTCTTCCAGCTGCCATGTCTGAGAATTGATCAACCACATCGTTCTTTTAACTCTACTGCAACTCACTGTTTCTCTCACTCTCTGTCTGAGAAGGGCATTGAAGAACACGGGCTTTATCAGGATGAGTTGTTTTCATCCTCGTCTTTCTGAGCTCAGGACAAGCACATCATCATAGGCCGTGTGCTTTGCCTACTGGGAATTATAGTTTTCAGCTGAAGGACTTTGCTGAAGTTCAGAGGTGTCACTTTGTTCTTTGTCGCAGCGTTTCCTCCTGGATGTTATTCGCTCTGATCTGTGTGACCCTCCGAAAGAAAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019293-'21-16,'21-15,23-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=0.393 C2=1.000
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.6=100)
A:
PF087815=DP=PD(5.5=28.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGCCCTGGAGCCTTATG
R:
GGGCTGAGCTTTTAGTCCTCG
Band lengths:
180-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]