GgaEX6005342 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3E8]
Coordinates
chr1:136646832-136651427:-
Coord C1 exon
chr1:136651261-136651427
Coord A exon
chr1:136650568-136650649
Coord C2 exon
chr1:136646832-136648179
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACGTATGTTTGTTTTTACAGAAA
3' ss Score
9.47
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTTGAGTATCTATTTAATTTTGACAATACTTTTGAAATTCATGATGATATAGAAGTACTAAAACGAATGGGAATGGCCTGTGGGCTAGAATCTGGAAGCTGTTCAGCAGAGGACCTAAAAATTGCAAGGAGTTTGGTTCCCAAAGCTTTGGAACCATATGTGACAG
Seq A exon
AAATGGCTCAGGGATCAATCAGCAGTGTATATGTCACATCTTCGTCAGGTTCCACATCAAATGGCACAAGATTTTCAGCCAG
Seq C2 exon
TGACTTTTCCAATGGTGGAGATGGGATGTTGGCTACAAGTTCCAATGGATCTCAGTACAGTGGCTCCAGAGTTGAAACACCAGTTTCTTATGTGGGGGATGACGATGATGACGATGACGACTTTAATGAAAACGATGACGACGACTGATGCCCTTTGCTTGTAGACTTGTTAAAATTCAGCAAGCTTCAGGAATAAATTGTTCTAGGGAGAGAAGTCTCAAATAACTTTGCCCCATCCCTCAAGGAAAACGTTGGTAAGCAGTTCTGAGTTTAGAAATGCACCTCTGATAAGCAAGCGAGGATTGTTTTATGTAGGATATTTTTAAATGTGGTGTGGATGTGTGTTTTTGATACCAGTGTGTTAATGCAGAGCCTTTATTTACTCTTGGTTTAGGGGTTTTTGGTTTATTGTTTTACTTTGTTTTGTTTTTGGGTTTTGTTTTTTTTTTTTTTTACTTGAAGGAAAATGGATTTTGCCCCCAAATGTTCTTGCTGAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016823-'20-25,'20-22,22-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.837
Domain overlap (PFAM):
C1:
PF087815=DP=FE(38.6=100)
A:
PF087815=DP=PD(5.5=28.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGAATGGGAATGGCCTGTG
R:
ACTCTGGAGCCACTGTACTGA
Band lengths:
177-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]