RnoEX0090069 @ rn6
Exon Skipping
Gene
ENSRNOG00000019222 | Tfdp1
Description
transcription factor Dp-1 [Source:RGD Symbol;Acc:1560344]
Coordinates
chr16:81113894-81120219:+
Coord C1 exon
chr16:81113894-81114000
Coord A exon
chr16:81118882-81118926
Coord C2 exon
chr16:81119914-81120219
Length
45 bp
Sequences
Splice sites
3' ss Seq
GTGACTTCTCTTTTGATCAGGTG
3' ss Score
8.34
5' ss Seq
GTGGTAGGA
5' ss Score
4.71
Exon sequences
Seq C1 exon
GTGTGGTGTCTCTTGTGGCTGTGCACCCATCCACAGTGAACACACTGGGGAAGCAGCTTTTGCCAAAAACCTTCGGACAGTCCAATGTCAATATCACACAGCAAGTG
Seq A exon
GTGATTGGCACGCCTCAGAGACCTGCAGCAGCCAACACTATTGTG
Seq C2 exon
CGGAACAGGAAAGGTGAGAAGAATGGCAAAGGCCTGCGGCATTTCTCCATGAAGGTGTGTGAGAAGGTGCAGAGGAAAGGGACGACCTCCTACAATGAGGTGGCCGACGAGCTGGTTGCCGAGTTCAGCGCCGCTGACAACCACATCTTACCCAACGAGTCCGCCTACGACCAGAAGAACATCCGGCGGCGTGTGTACGATGCCTTAAATGTGCTGATGGCCATGAACATCATCTCCAAGGAGAAGAAGGAGATCAAGTGGATCGGCCTGCCCACCAACTCTGCTCAGGAGTGCCAGAACTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019222_MULTIEX1-1/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.486 C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0231915=E2F_TDP=WD(100=84.9),PF087815=DP=PU(4.1=7.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGGGGAAGCAGCTTTTG
R:
TCCTCTGCACCTTCTCACACA
Band lengths:
142-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]